SMTL ID : 5x72.1

The crystal Structure PDE delta in complex with (rac)-p9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x P59: (2R)-2-(2-fluorophenyl)-3-phenyl-1,2-dihydroquinazolin-4-one(Non-covalent)

P59.1: 15 residues within 4Å: Chain A: L.17, M.20, L.22, W.32, L.38, A.47, R.61, L.63, Q.78, I.109, I.129, T.131, V.145, L.147 Ligands: P69.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.17, A:L.22, A:L.38, A:A.47, A:L.63, A:I.109, A:I.129, A:L.147 Hydrogen bonds: A:R.61, A:Q.78, A:T.131 Water bridges: A:T.131 pi-Stacking: A:W.32 pi-Cation interactions: A:R.61

1 x P69: (2S)-2-(2-fluorophenyl)-3-phenyl-1,2-dihydroquinazolin-4-one(Non-covalent)

P69.2: 15 residues within 4Å: Chain A: L.22, V.49, I.53, L.54, C.56, V.59, V.80, W.90, I.109, A.111, S.115, Q.116, L.147, Y.149 Ligands: P59.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.22, A:V.49, A:I.53, A:I.53, A:V.59, A:V.80, A:A.111, A:Q.116, A:L.147 Hydrogen bonds: A:Y.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Structural Biology-Inspired Discovery of Novel KRAS-PDE delta Inhibitors. J. Med. Chem. (2017)

Release Date

2017-10-04

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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