SMTL ID : 5x73.1

The crystal Structure PDE delta in complex with R-p9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x P59: (2R)-2-(2-fluorophenyl)-3-phenyl-1,2-dihydroquinazolin-4-one(Non-covalent)

P59.1: 13 residues within 4Å: Chain A: M.20, L.22, W.32, L.38, R.61, Q.78, W.90, I.109, I.129, T.131, V.145, L.147 Ligands: P59.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.22, A:L.38, A:L.38, A:W.90, A:I.109, A:I.109, A:I.129 Hydrogen bonds: A:R.61, A:Q.78, A:T.131 Water bridges: A:T.131 pi-Stacking: A:W.32 pi-Cation interactions: A:R.61 P59.2: 14 residues within 4Å: Chain A: L.22, I.53, L.54, C.56, V.80, E.88, W.90, I.109, A.111, M.117, I.129, L.147, Y.149 Ligands: P59.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.22, A:I.53, A:L.54, A:V.80, A:A.111, A:I.129 Hydrogen bonds: A:E.88, A:Y.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Structural Biology-Inspired Discovery of Novel KRAS-PDE delta Inhibitors. J. Med. Chem. (2017)

Release Date

2017-10-04

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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