- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.07 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)
- 11 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: T.7, E.9, Y.92, D.94, T.127
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:T.7, A:E.9, A:D.94
MG.3: 4 residues within 4Å:- Chain A: Y.62, S.66, R.69, L.93
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:Y.62, A:S.66
MG.4: 5 residues within 4Å:- Chain A: E.39, P.40, F.65, D.68, R.69
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:F.65, A:D.68
MG.5: 2 residues within 4Å:- Chain A: T.17
- Ligands: ACP.9
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.17, H2O.3, H2O.3
MG.6: 3 residues within 4Å:- Chain A: L.165, A.168, E.169
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:L.165, A:E.169, H2O.3
MG.11: 5 residues within 4Å:- Chain B: Y.62, S.66, R.69, L.93, A.115
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:Y.62, B:S.66
MG.12: 6 residues within 4Å:- Chain B: E.39, P.40, F.65, D.68, R.69
- Ligands: TMP.10
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.68
MG.13: 5 residues within 4Å:- Chain B: T.7, E.9, Y.92, D.94, T.127
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:T.7, B:E.9, B:D.94, H2O.6
MG.14: 4 residues within 4Å:- Chain B: L.11, D.12, Y.99, F.155
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:Y.99, H2O.4
MG.15: 5 residues within 4Å:- Chain B: Q.19, R.22, L.23, A.186, I.189
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:Q.19, H2O.6
MG.16: 3 residues within 4Å:- Chain B: L.165, A.168, E.169
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:L.165, B:E.169, H2O.6
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 4 residues within 4Å:- Chain A: E.169, P.170, G.171, R.172
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain A: L.4, F.5, R.125
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain B: L.176, D.177, L.180
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain B: K.123, P.124, R.172
Ligand excluded by PLIPCL.19: 4 residues within 4Å:- Chain B: G.13, S.14, G.15, K.16
Ligand excluded by PLIP- 1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
ACP.9: 16 residues within 4Å:- Chain A: L.11, D.12, G.13, S.14, G.15, K.16, T.17, T.18, R.91, A.178, L.180, P.181, E.182, I.185
- Ligands: TMP.1, MG.5
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:D.12, A:G.13, A:S.14, A:G.15, A:K.16, A:K.16, A:K.16, A:T.17, A:T.18, A:R.91, A:L.180
- Water bridges: A:R.38
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaudhary, S.K. et al., Structural and functional roles of dynamically correlated residues in thymidylate kinase. Acta Crystallogr D Struct Biol (2018)
- Release Date
- 2018-03-14
- Peptides
- Thymidylate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.07 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)
- 11 x MG: MAGNESIUM ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaudhary, S.K. et al., Structural and functional roles of dynamically correlated residues in thymidylate kinase. Acta Crystallogr D Struct Biol (2018)
- Release Date
- 2018-03-14
- Peptides
- Thymidylate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B