- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.19 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 14 residues within 4Å:- Chain A: L.11, D.12, G.13, S.14, G.15, K.16, T.17, T.18, A.178, L.180, P.181, E.182, I.185
- Ligands: MG.4
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:L.11, A:G.13, A:S.14, A:G.15, A:K.16, A:T.17, A:T.18, A:T.18, A:L.180
- Water bridges: A:K.16, A:K.16, A:T.17, A:T.17
- Salt bridges: A:K.16
ADP.9: 15 residues within 4Å:- Chain B: L.11, D.12, G.13, S.14, G.15, K.16, T.17, T.18, L.138, A.178, L.180, P.181, E.182, I.185
- Ligands: MG.13
20 PLIP interactions:20 interactions with chain B- Hydrogen bonds: B:L.11, B:D.12, B:D.12, B:G.13, B:S.14, B:G.15, B:K.16, B:T.17, B:T.18, B:T.18, B:L.180
- Water bridges: B:K.16, B:T.17, B:T.17, B:T.17, B:T.17, B:T.17, B:R.21, B:E.182
- Salt bridges: B:K.16
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 5 residues within 4Å:- Chain A: T.7, E.9, Y.92, D.94, T.127
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:T.7, A:E.9, A:D.94, H2O.1
MG.4: 2 residues within 4Å:- Chain A: T.17
- Ligands: ADP.2
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:T.17, H2O.1, H2O.1, H2O.2, H2O.3
MG.5: 5 residues within 4Å:- Chain A: E.39, P.40, F.65, D.68, R.69
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.68
MG.6: 5 residues within 4Å:- Chain A: Y.62, S.66, R.69, L.93, A.115
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:Y.62, A:S.66
MG.10: 5 residues within 4Å:- Chain B: T.7, E.9, Y.92, D.94, T.127
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:T.7, B:E.9, B:D.94, H2O.10
MG.11: 6 residues within 4Å:- Chain B: E.39, P.40, F.65, D.68, R.69
- Ligands: TYD.8
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.68
MG.12: 5 residues within 4Å:- Chain B: Y.62, S.66, R.69, L.93, A.115
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:S.66
MG.13: 2 residues within 4Å:- Chain B: T.17
- Ligands: ADP.9
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:T.17, H2O.9, H2O.9, H2O.9, H2O.11
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaudhary, S.K. et al., Insights into product release dynamics through structural analyses of thymidylate kinase. Int. J. Biol. Macromol. (2018)
- Release Date
- 2018-12-19
- Peptides
- Thymidylate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.19 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaudhary, S.K. et al., Insights into product release dynamics through structural analyses of thymidylate kinase. Int. J. Biol. Macromol. (2018)
- Release Date
- 2018-12-19
- Peptides
- Thymidylate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B