- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- monomer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.6: 19 residues within 4Å:- Chain A: T.354, E.440, E.443, F.488, R.490, M.495, K.516, G.517, A.518, R.561, C.562, L.563, T.626, G.627, D.628, R.679, N.707
- Ligands: MG.3, ALF.4
21 PLIP interactions:21 interactions with chain A- Hydrogen bonds: A:T.354, A:T.354, A:E.440, A:E.443, A:K.516, A:R.561, A:C.562, A:T.626, A:G.627, A:G.627, A:R.679, A:N.707
- Water bridges: A:E.440, A:R.490, A:R.490, A:R.490, A:V.680
- Salt bridges: A:R.490, A:R.561
- pi-Stacking: A:F.488, A:F.488
- 46 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-functional Binders)(Non-covalent)
PCW.7: 1 residues within 4Å:- Ligands: PCW.23
Ligand excluded by PLIPPCW.8: 5 residues within 4Å:- Chain A: R.64, L.68
- Ligands: PCW.19, PCW.37, PCW.50
Ligand excluded by PLIPPCW.9: 2 residues within 4Å:- Ligands: PCW.10, PCW.20
Ligand excluded by PLIPPCW.10: 5 residues within 4Å:- Chain A: Q.260, K.263, L.267
- Ligands: PCW.9, PCW.28
Ligand excluded by PLIPPCW.11: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPCW.12: 4 residues within 4Å:- Chain A: G.832
- Ligands: PCW.20, PCW.38, PCW.48
Ligand excluded by PLIPPCW.13: 3 residues within 4Å:- Ligands: PCW.14, PCW.31, PCW.41
Ligand excluded by PLIPPCW.14: 5 residues within 4Å:- Chain A: M.924, F.987, R.990, N.991
- Ligands: PCW.13
Ligand excluded by PLIPPCW.15: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPCW.16: 1 residues within 4Å:- Chain A: W.929
Ligand excluded by PLIPPCW.17: 7 residues within 4Å:- Chain A: W.108, Q.109, R.325, F.810, W.933, S.937
- Ligands: PCW.21
Ligand excluded by PLIPPCW.18: 2 residues within 4Å:- Chain A: L.50, R.111
Ligand excluded by PLIPPCW.19: 1 residues within 4Å:- Ligands: PCW.8
Ligand excluded by PLIPPCW.20: 3 residues within 4Å:- Ligands: PCW.9, PCW.12, PCW.48
Ligand excluded by PLIPPCW.21: 3 residues within 4Å:- Chain A: I.932, W.933
- Ligands: PCW.17
Ligand excluded by PLIPPCW.22: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPCW.23: 2 residues within 4Å:- Ligands: PCW.7, PCW.46
Ligand excluded by PLIPPCW.24: 3 residues within 4Å:- Chain A: A.781
- Ligands: PCW.32, PCW.34
Ligand excluded by PLIPPCW.25: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPCW.26: 3 residues within 4Å:- Chain A: Y.868, H.869
- Ligands: PCW.36
Ligand excluded by PLIPPCW.27: 3 residues within 4Å:- Chain A: E.46, S.49
- Ligands: PCW.44
Ligand excluded by PLIPPCW.28: 2 residues within 4Å:- Ligands: PCW.10, PCW.49
Ligand excluded by PLIPPCW.29: 1 residues within 4Å:- Ligands: PCW.30
Ligand excluded by PLIPPCW.30: 4 residues within 4Å:- Chain A: K.973
- Ligands: PCW.29, PCW.42, PCW.46
Ligand excluded by PLIPPCW.31: 1 residues within 4Å:- Ligands: PCW.13
Ligand excluded by PLIPPCW.32: 7 residues within 4Å:- Chain A: H.279, A.780, A.781, G.783, T.872, M.875
- Ligands: PCW.24
Ligand excluded by PLIPPCW.33: 1 residues within 4Å:- Ligands: PCW.43
Ligand excluded by PLIPPCW.34: 5 residues within 4Å:- Chain A: L.782, T.872, H.873
- Ligands: PCW.24, PCW.36
Ligand excluded by PLIPPCW.35: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPCW.36: 2 residues within 4Å:- Ligands: PCW.26, PCW.34
Ligand excluded by PLIPPCW.37: 1 residues within 4Å:- Ligands: PCW.8
Ligand excluded by PLIPPCW.38: 6 residues within 4Å:- Chain A: S.831, G.832, W.833, F.836
- Ligands: PCW.12, PCW.39
Ligand excluded by PLIPPCW.39: 1 residues within 4Å:- Ligands: PCW.38
Ligand excluded by PLIPPCW.40: 2 residues within 4Å:- Ligands: PCW.41, PCW.45
Ligand excluded by PLIPPCW.41: 2 residues within 4Å:- Ligands: PCW.13, PCW.40
Ligand excluded by PLIPPCW.42: 2 residues within 4Å:- Chain A: Y.859
- Ligands: PCW.30
Ligand excluded by PLIPPCW.43: 1 residues within 4Å:- Ligands: PCW.33
Ligand excluded by PLIPPCW.44: 1 residues within 4Å:- Ligands: PCW.27
Ligand excluded by PLIPPCW.45: 3 residues within 4Å:- Chain A: I.984, Y.992
- Ligands: PCW.40
Ligand excluded by PLIPPCW.46: 5 residues within 4Å:- Chain A: L.969, K.973, L.976
- Ligands: PCW.23, PCW.30
Ligand excluded by PLIPPCW.47: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPCW.48: 2 residues within 4Å:- Ligands: PCW.12, PCW.20
Ligand excluded by PLIPPCW.49: 2 residues within 4Å:- Chain A: E.259
- Ligands: PCW.28
Ligand excluded by PLIPPCW.50: 4 residues within 4Å:- Chain A: I.55
- Ligands: PCW.8, PCW.51, PCW.52
Ligand excluded by PLIPPCW.51: 4 residues within 4Å:- Chain A: W.51, I.55
- Ligands: PCW.50, PCW.52
Ligand excluded by PLIPPCW.52: 2 residues within 4Å:- Ligands: PCW.50, PCW.51
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Norimatsu, Y. et al., Protein-phospholipid interplay revealed with crystals of a calcium pump. Nature (2017)
- Release Date
- 2017-05-17
- Peptides
- Sarcoplasmic/endoplasmic reticulum calcium ATPase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- monomer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 46 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Norimatsu, Y. et al., Protein-phospholipid interplay revealed with crystals of a calcium pump. Nature (2017)
- Release Date
- 2017-05-17
- Peptides
- Sarcoplasmic/endoplasmic reticulum calcium ATPase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.