- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- monomer
- Ligands
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x TG1: OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER(Non-covalent)
- 30 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)
PCW.3: 6 residues within 4Å:- Chain A: E.256, V.264
- Ligands: TG1.2, PCW.19, PCW.30, PCW.32
Ligand excluded by PLIPPCW.4: 4 residues within 4Å:- Chain A: G.832, W.833, F.836
- Ligands: PCW.28
Ligand excluded by PLIPPCW.5: 8 residues within 4Å:- Chain A: S.922, M.924, R.925, E.983, F.987, R.990, N.991
- Ligands: PCW.20
Ligand excluded by PLIPPCW.6: 2 residues within 4Å:- Chain A: R.325
- Ligands: PCW.21
Ligand excluded by PLIPPCW.7: 6 residues within 4Å:- Chain A: W.108, T.317, A.321, L.337
- Ligands: PCW.18, PCW.21
Ligand excluded by PLIPPCW.8: 1 residues within 4Å:- Ligands: PCW.30
Ligand excluded by PLIPPCW.9: 3 residues within 4Å:- Chain A: L.61, R.64, S.262
Ligand excluded by PLIPPCW.10: 2 residues within 4Å:- Chain A: W.78, F.89
Ligand excluded by PLIPPCW.11: 3 residues within 4Å:- Chain A: S.288, W.289, I.290
Ligand excluded by PLIPPCW.12: 5 residues within 4Å:- Chain A: M.858, Y.859, G.865, T.867, Y.868
Ligand excluded by PLIPPCW.13: 2 residues within 4Å:- Chain A: W.51, E.52
Ligand excluded by PLIPPCW.14: 4 residues within 4Å:- Chain A: I.275, L.782, Y.868
- Ligands: PCW.23
Ligand excluded by PLIPPCW.15: 1 residues within 4Å:- Chain A: W.78
Ligand excluded by PLIPPCW.16: 3 residues within 4Å:- Chain A: M.970, K.973
- Ligands: PCW.22
Ligand excluded by PLIPPCW.17: 1 residues within 4Å:- Chain A: F.93
Ligand excluded by PLIPPCW.18: 9 residues within 4Å:- Chain A: Q.57, A.101, N.102, V.105, Q.109, P.313, A.314, T.317
- Ligands: PCW.7
Ligand excluded by PLIPPCW.19: 6 residues within 4Å:- Chain A: Q.260, K.263, L.267
- Ligands: PCW.3, PCW.29, PCW.30
Ligand excluded by PLIPPCW.20: 3 residues within 4Å:- Chain A: F.987, N.991
- Ligands: PCW.5
Ligand excluded by PLIPPCW.21: 4 residues within 4Å:- Chain A: R.325
- Ligands: PCW.6, PCW.7, PCW.25
Ligand excluded by PLIPPCW.22: 3 residues within 4Å:- Chain A: W.855, Y.859
- Ligands: PCW.16
Ligand excluded by PLIPPCW.23: 6 residues within 4Å:- Chain A: L.274, I.275, N.276, A.781
- Ligands: PCW.14, PCW.27
Ligand excluded by PLIPPCW.24: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPCW.25: 2 residues within 4Å:- Chain A: W.933
- Ligands: PCW.21
Ligand excluded by PLIPPCW.26: 3 residues within 4Å:- Chain A: I.86, P.953, M.956
Ligand excluded by PLIPPCW.27: 5 residues within 4Å:- Chain A: L.274, I.277, G.278, N.281
- Ligands: PCW.23
Ligand excluded by PLIPPCW.28: 1 residues within 4Å:- Ligands: PCW.4
Ligand excluded by PLIPPCW.29: 2 residues within 4Å:- Chain A: K.263
- Ligands: PCW.19
Ligand excluded by PLIPPCW.30: 4 residues within 4Å:- Ligands: PCW.3, PCW.8, PCW.19, PCW.32
Ligand excluded by PLIPPCW.31: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPCW.32: 5 residues within 4Å:- Chain A: S.831, G.832, F.835
- Ligands: PCW.3, PCW.30
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Norimatsu, Y. et al., Protein-phospholipid interplay revealed with crystals of a calcium pump. Nature (2017)
- Release Date
- 2017-06-07
- Peptides
- Sarcoplasmic/endoplasmic reticulum calcium ATPase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- monomer
- Ligands
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x TG1: OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER(Non-covalent)
- 30 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Norimatsu, Y. et al., Protein-phospholipid interplay revealed with crystals of a calcium pump. Nature (2017)
- Release Date
- 2017-06-07
- Peptides
- Sarcoplasmic/endoplasmic reticulum calcium ATPase 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.