SMTL ID : 5xjy.1

Cryo-EM structure of human ABCA1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- BMA- BMA: beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-BMA.1: 7 residues within 4Å: Chain A: Y.105, P.106, P.112, Q.1478, N.1479, N.1525, D.1528 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: I.541, N.1658 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: V.114, N.119 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.114 Hydrogen bonds: A:N.119 NAG.4: 4 residues within 4Å: Chain A: N.421, Q.425, L.528, N.529 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.421 NAG.5: 2 residues within 4Å: Chain A: R.506, N.510 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.510 NAG.6: 2 residues within 4Å: Chain A: W.539, N.542 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.542 NAG.7: 3 residues within 4Å: Chain A: Q.1471, N.1474, W.1475 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.1475 Hydrogen bonds: A:Q.1471

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qian, H. et al., Structure of the Human Lipid Exporter ABCA1. Cell (2017)

Release Date

2017-06-07

Peptides

ATP-binding cassette sub-family A member 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

ATP-binding cassette sub-family A member 1

Related Entries With Identical Sequence