SMTL ID : 7roq.1

Alternative Structure of Human ABCA1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 7 residues within 4Å: Chain A: Y.105, P.106, A.111, P.112, N.1479, N.1525, D.1528 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: M.545, N.1658, E.1858 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 6 residues within 4Å: Chain A: V.114, G.116, N.117, F.118, N.119, N.1562 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.114 Hydrogen bonds: A:N.119, A:N.1562 NAG.4: 5 residues within 4Å: Chain A: A.418, N.421, Q.425, L.528, N.529 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.418 Hydrogen bonds: A:N.421, A:Q.425, A:L.528 NAG.5: 3 residues within 4Å: Chain A: R.506, E.507, N.510 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.510

1 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.6: 5 residues within 4Å: Chain A: L.766, C.770, I.773, T.777 Ligands: CLR.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.766, A:I.773

2 x CLR: CHOLESTEROL(Covalent)(Non-covalent)

CLR.7: 7 residues within 4Å: Chain A: L.766, I.773, F.1368, F.1688, Y.1788, V.1789 Ligands: POV.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.766, A:I.773, A:F.1688, A:Y.1788, A:V.1789 CLR.8: 2 residues within 4Å: Chain A: V.1790, S.1793 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.1790

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aller, S.G., Refined ABCA1 with Domain-swapped Regulatory Domains. Plos One (2022)

Release Date

2022-01-19

Peptides

Phospholipid-transporting ATPase ABCA1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Phospholipid-transporting ATPase ABCA1

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