SMTL ID : 5xmh.1 (1 other biounit)

Crystal structure of an IgM rheumatoid factor YES8c in complex with IgG1 Fc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 12 residues within 4Å: Chain A: F.5, F.7, K.10, T.24, V.26, V.28, D.29, Q.59, Y.60, N.61, T.63, R.65 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.61 Hydrogen bonds: A:Q.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shiroishi, M. et al., Structure-function analyses of a stereotypic rheumatoid factor unravel the structural basis for germline-encoded antibody autoreactivity. J. Biol. Chem. (2018)

Release Date

2018-03-21

Peptides

Immunoglobulin gamma-1 heavy chain: A
YES8c light chain: B
YES8c heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Immunoglobulin gamma-1 heavy chain

YES8c light chain

YES8c heavy chain

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