SMTL ID : 8zcl.1

Ambient Temperature Crystal Structure of Fc Fragment of Human IgG1 from Biosimilar VEGF-Trap

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.1: 15 residues within 4Å: Chain A: F.5, F.7, P.8, K.10, E.22, T.24, V.28, D.29, Q.59, Y.60, N.61, T.63, R.65, K.98 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-FUC.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.10, A:E.22, A:E.22, A:T.24, A:T.24 Water bridges: A:E.22

1 x NAG- NAG- BMA- MAN- NAG- MAN- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-FUC.2: 12 residues within 4Å: Chain B: F.5, F.7, K.10, T.24, V.28, D.29, Q.59, Y.60, N.61, T.63, R.65 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.10, B:K.10, B:Q.59 Hydrophobic interactions: B:Y.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Destan, E. et al., Ambient Temperature Crystal Structure of Fc Fragment of Human IgG1 from Biosimilar VEGF-Trap. To Be Published

Release Date

2024-05-08

Peptides

Immunoglobulin gamma-1 heavy chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin gamma-1 heavy chain

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