SMTL ID : 5xnm.1

Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-10-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
98 x CHL: CHLOROPHYLL B(Non-covalent)
216 x CLA: CHLOROPHYLL A(Non-covalent)
32 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
16 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
16 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
36 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
24 x BCR: BETA-CAROTENE(Non-covalent)
2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
2 x FE2: FE (II) ION(Non-covalent)
4 x PHO: PHEOPHYTIN A(Non-covalent)
8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
14 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
10 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Su, X. et al., Structure and assembly mechanism of plant C2S2M2-type PSII-LHCII supercomplex. Science (2017)
Release Date
2017-09-20
Peptides
Chlorophyll a-b binding protein 8, chloroplastic: ABKRZ12biq
Chlorophyll a-b binding protein, chloroplastic: C3
Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24: D4
Photosystem II protein D1: E5
Photosystem II CP47 reaction center protein: F6
Photosystem II CP43 reaction center protein: G7
Photosystem II D2 protein: H8
Cytochrome b559 subunit alpha: I9
Cytochrome b559 subunit beta, PsbF: Ja
Photosystem II reaction center protein H: Lc
Photosystem II reaction center protein I, PsbI: Md
Photosystem II reaction center protein J: Ne
Photosystem II reaction center protein K: Of
Photosystem II reaction center protein L: Pg
Photosystem II reaction center protein M: Qh
Oxygen-evolving enhancer protein 1, chloroplastic: Sj
Light harvesting chlorophyll a/b-binding protein Lhcb4, CP29: Tk
Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26: Ul
Photosystem II reaction center protein T: Vm
Photosystem II luminal extrinsic protein Tn, PsbTn: Wn
Photosystem II reaction center protein W, PSBW: Xo
Photosystem II reaction center protein X: Yp
Photosystem II reaction center protein Z: 0r
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
1
B
2
K
G
R
N
Z
Y
1
5
2
6
b
g
i
n
q
y
C
3
3
7
D
4
4
8
E
A
5
a
F
B
6
b
G
C
7
c
H
D
8
d
I
E
9
e
J
F
a
f
L
H
c
h
M
I
d
i
N
J
e
j
O
K
f
k
P
L
g
l
Q
M
h
m
S
O
j
o
T
R
k
r
U
S
l
s
V
T
m
t
W
U
n
u
X
W
o
w
Y
X
p
x
0
Z
r
z
Membrane
We predict this structure to be a membrane protein.

Chlorophyll a-b binding protein 8, chloroplastic

Toggle Identical (AKRZ1biq) Toggle Identical (B2)

Chlorophyll a-b binding protein, chloroplastic

Toggle Identical (C3)

Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24

Toggle Identical (D4)

Photosystem II protein D1

Toggle Identical (E5)

Photosystem II CP47 reaction center protein

Toggle Identical (F6)

Photosystem II CP43 reaction center protein

Toggle Identical (G7)

Photosystem II D2 protein

Toggle Identical (H8)

Cytochrome b559 subunit alpha

Toggle Identical (I9)

Cytochrome b559 subunit beta, PsbF

Toggle Identical (Ja)

Photosystem II reaction center protein H

Toggle Identical (Lc)

Photosystem II reaction center protein I, PsbI

Toggle Identical (Md)

Photosystem II reaction center protein J

Toggle Identical (Ne)

Photosystem II reaction center protein K

Toggle Identical (Of)

Photosystem II reaction center protein L

Toggle Identical (Pg)

Photosystem II reaction center protein M

Toggle Identical (Qh)

Oxygen-evolving enhancer protein 1, chloroplastic

Toggle Identical (Sj)

Light harvesting chlorophyll a/b-binding protein Lhcb4, CP29

Toggle Identical (Tk)

Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26

Toggle Identical (Ul)

Photosystem II reaction center protein T

Toggle Identical (Vm)

Photosystem II luminal extrinsic protein Tn, PsbTn

Toggle Identical (Wn)

Photosystem II reaction center protein W, PSBW

Toggle Identical (Xo)

Photosystem II reaction center protein X

Toggle Identical (Yp)

Photosystem II reaction center protein Z

Toggle Identical (0r)

Related Entries With Identical Sequence

3jcu.1 | 5xnl.1 | 5xnn.1 | 5xno.1 | 6yp7.1