SMTL ID : 5xwi.1

Crystal Structure of SPAP, an alkaline phosphatase from Sphingomonas showing covalent intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.49, T.89, D.300, D.345, H.346 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.49, A:D.345, A:H.346 ZN.2: 5 residues within 4Å: Chain A: T.89, D.300, H.304, H.491 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.300, A:D.300, A:H.304, A:H.491, H2O.1

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.547, V.549, G.551, D.553 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.547, A:V.549, A:G.551, A:D.553, H2O.7

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: S.103, R.104, S.442, R.457, D.542 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.457, A:R.457, A:D.542 Water bridges: A:S.103, A:S.103

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: Q.454 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.454 Water bridges: A:Q.454

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bihani, S.C., Crystal Structure of SPAP, an alkaline phosphatase from Sphingomonas showing covalent intermediate. To Be Published

Release Date

2018-07-04

Peptides

Alkaline phosphatase PhoK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alkaline phosphatase PhoK

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