SMTL ID : 5xwk.1

Crystal Structure of SPAP, an alkaline phosphatase from Sphingomonas in complex with inorganic phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: W.450, L.452, E.455, P.494, W.495, D.496 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.494 Water bridges: A:L.452, A:D.496, A:R.499, A:R.499 GOL.6: 5 residues within 4Å: Chain A: S.103, R.104, S.442, R.457, D.542 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.103, A:R.104, A:S.442, A:R.457, A:R.457, A:D.542 Water bridges: A:R.101 GOL.7: 4 residues within 4Å: Chain A: D.129, Q.132, A.142, S.143 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.129, A:Q.132, A:A.142 Water bridges: A:K.199 GOL.8: 6 residues within 4Å: Chain A: A.86, E.88, S.397, G.398, D.399, G.492 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.87, A:E.88, A:D.399, A:D.399, A:G.492 GOL.9: 2 residues within 4Å: Chain A: R.164, M.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.164 Water bridges: A:Q.185

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: D.49, T.89, D.300, D.345, H.346 Ligands: PO4.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.49, A:T.89, A:D.345, A:H.346 ZN.3: 5 residues within 4Å: Chain A: D.300, H.304, H.346, H.491 Ligands: PO4.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.300, A:D.300, A:H.304, A:H.491

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: D.547, V.549, G.551, D.553 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.547, A:V.549, A:G.551, A:D.553, H2O.11

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 12 residues within 4Å: Chain A: D.49, E.88, T.89, N.110, K.171, R.173, D.300, H.304, H.346, H.491 Ligands: ZN.2, ZN.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.89, A:N.110, A:N.110 Salt bridges: A:K.171, A:R.173, A:H.304, A:H.346, A:H.491

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bihani, S.C., Crystal Structure of SPAP, an alkaline phosphatase from Sphingomonas in complex with. To Be Published

Release Date

2018-07-18

Peptides

Alkaline phosphatase PhoK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alkaline phosphatase PhoK

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