SMTL ID : 5xz6.1

Crystal Structure of Phosphofructokinase from Staphylococcus aureus in complex with adenylylimidodiphosphate, the ATP analogue

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: R.21, G.58, D.59 Chain B: R.156, G.187 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.21, A:R.25, B:R.156 GOL.3: 5 residues within 4Å: Chain A: R.156, G.187 Chain B: R.21, G.58, D.59 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.21, B:R.25, A:R.156

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 18 residues within 4Å: Chain A: S.9, G.10, G.11, Y.41, R.72, C.73, F.76, K.77, G.101, G.102, D.103, G.104, S.105, R.107, G.108, T.127, D.129, R.173 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.9, A:G.11, A:C.73, A:C.73, A:G.102, A:G.102, A:G.104, A:S.105, A:R.111, A:T.127, A:D.129, A:D.129, A:R.173 Salt bridges: A:R.173 ANP.4: 18 residues within 4Å: Chain B: S.9, G.10, G.11, Y.41, R.72, C.73, F.76, K.77, G.101, G.102, D.103, G.104, S.105, R.107, G.108, T.127, D.129, R.173 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.9, B:G.11, B:C.73, B:C.73, B:G.102, B:G.102, B:D.103, B:G.104, B:S.105, B:R.111, B:T.127, B:D.129, B:R.173 Salt bridges: B:R.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, T. et al., Structural Insights into the Regulation of Staphylococcus aureus Phosphofructokinase by Tetramer-Dimer Conversion. Biochemistry (2018)

Release Date

2019-02-27

Peptides

ATP-dependent 6-phosphofructokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ATP-dependent 6-phosphofructokinase

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