SMTL ID : 5xz9.1

Crystal Structure of Phosphofructokinase from Staphylococcus aureus in complex with adenylylimidodiphosphate, the ATP analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain A: S.9, G.10, Y.41, R.72, C.73, F.76, K.77, G.101, G.102, D.103, G.104, S.105, R.107, G.108, R.173 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.9, A:C.73, A:C.73, A:G.102, A:G.102, A:D.103, A:D.103, A:G.104, A:S.105, A:D.129, A:D.129 Water bridges: A:Y.41 ATP.3: 15 residues within 4Å: Chain B: S.9, G.10, Y.41, R.72, C.73, F.76, K.77, G.101, G.102, D.103, G.104, S.105, R.107, G.108, R.173 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.9, B:C.73, B:C.73, B:G.102, B:G.102, B:D.103, B:G.104, B:S.105, B:D.129 Water bridges: B:Y.41

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: R.21, R.25, V.57, G.58, D.59, T.60, I.61 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.21, A:R.25, A:R.25, A:D.59, A:T.60, A:T.60, A:I.61 Water bridges: A:D.59, A:Q.62 GOL.4: 7 residues within 4Å: Chain B: R.21, R.25, V.57, G.58, D.59, T.60, I.61 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.21, B:R.25, B:R.25, B:D.59, B:T.60, B:I.61 Water bridges: B:D.59, B:D.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, T. et al., Structural Insights into the Regulation of Staphylococcus aureus Phosphofructokinase by Tetramer-Dimer Conversion. Biochemistry (2018)

Release Date

2019-03-13

Peptides

ATP-dependent 6-phosphofructokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ATP-dependent 6-phosphofructokinase

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