SMTL ID : 5y1q.1

Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-2-(3-(3-chlorobenzyl)ureido)-N-hydroxy-4-methylpentanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.325, H.329, E.348 Ligands: 8L0.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.325, A:H.329, A:E.348, A:E.348

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: G.79 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.79, H2O.5, H2O.9, H2O.10 MG.3: 1 residues within 4Å: Chain A: E.786 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain A: E.355 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.355, H2O.7, H2O.7, H2O.10, H2O.11, H2O.12

1 x 8L0: (2S)-2-[(3-chlorophenyl)methylcarbamoylamino]-4-methyl-N-oxidanyl-pentanamide(Non-covalent)

8L0.5: 16 residues within 4Å: Chain A: E.148, V.288, G.289, A.290, M.291, E.292, R.318, H.325, E.326, H.329, E.348, Y.404, Y.409, R.826, Q.867 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.148, A:V.288, A:V.288, A:V.288, A:Y.404, A:Y.404 Hydrogen bonds: A:G.289, A:A.290, A:A.290, A:A.290, A:Y.409

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marapaka, A.K. et al., Development of peptidomimetic hydroxamates as PfA-M1 and PfA-M17 dual inhibitors: Biological evaluation and structural characterization by cocrystallization. Chin.Chem.Lett. (2022)

Release Date

2018-08-01

Peptides

M1 family aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

M1 family aminopeptidase

Related Entries With Identical Sequence