SMTL ID : 5y1x.1

Crystal structure of Plasmodium falciparum aminopeptidase N in complex with actinonin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.325, H.329, E.348 Ligands: BB2.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.325, A:H.329, A:E.348, A:E.348

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.786, N.821 No protein-ligand interaction detected (PLIP)

1 x BB2: ACTINONIN(Non-covalent)

BB2.3: 14 residues within 4Å: Chain A: N.287, V.288, G.289, A.290, E.292, R.318, H.325, E.326, H.329, E.348, Y.409, R.826, Q.867 Ligands: ZN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.409 Hydrogen bonds: A:G.289, A:A.290, A:R.318, A:R.318, A:Y.409 Water bridges: A:N.302, A:K.347, A:K.347, A:K.347

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: Y.682, S.732, L.733, K.736, Y.767 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.732, A:Y.767

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marapaka, A.K. et al., Crystal structure of Plasmodium falciparum aminopeptidase N in complex with actinonin. To Be Published

Release Date

2018-08-01

Peptides

M1 family aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

M1 family aminopeptidase

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