SMTL ID : 5y1z.1 (1 other biounit)

Crystal structure of ZMYND8 PHD-BROMO-PWWP tandem in complex with Drebrin ADF-H domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.93, D.94 Chain B: K.151 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.94 SO4.5: 3 residues within 4Å: Chain B: R.272, Y.280 Ligands: SO4.6 3 PLIP interactions: 3 interactions with chain B Water bridges: B:Y.280, B:Y.280 Salt bridges: B:R.272 SO4.6: 2 residues within 4Å: Chain B: R.272 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.272 SO4.7: 3 residues within 4Å: Chain B: K.202, G.205, F.206 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.205, B:F.206 Salt bridges: B:K.202

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.9, C.12, H.29, C.32 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.12, B:H.29, B:C.32 ZN.3: 4 residues within 4Å: Chain B: C.173, C.176, C.192, H.196 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.173, B:C.176, B:C.192, B:H.196 ZN.4: 4 residues within 4Å: Chain B: C.21, C.24, C.45, C.48 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.21, B:C.24, B:C.45, B:C.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, N. et al., The Structure of the ZMYND8/Drebrin Complex Suggests a Cytoplasmic Sequestering Mechanism of ZMYND8 by Drebrin. Structure (2017)

Release Date

2017-10-25

Peptides

Drebrin: A
Protein kinase C-binding protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Drebrin

Protein kinase C-binding protein 1

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