SMTL ID : 5y1z.2 (1 other biounit)

Crystal structure of ZMYND8 PHD-BROMO-PWWP tandem in complex with Drebrin ADF-H domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.21, C.24, C.45, C.48 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.21, B:C.24, B:C.45, B:C.48 ZN.2: 4 residues within 4Å: Chain B: C.9, C.12, H.29, C.32 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.12, B:H.29, B:C.32 ZN.3: 4 residues within 4Å: Chain B: C.173, C.176, C.192, H.196 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.173, B:C.176, B:C.192, B:H.196

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain B: N.168, R.215, R.231, W.233 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.168, B:W.233 Salt bridges: B:R.215, B:R.231 SO4.5: 3 residues within 4Å: Chain B: K.217, D.218, W.233 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.233

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain B: G.16, Q.17, H.29 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.17, B:Q.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, N. et al., The Structure of the ZMYND8/Drebrin Complex Suggests a Cytoplasmic Sequestering Mechanism of ZMYND8 by Drebrin. Structure (2017)

Release Date

2017-10-25

Peptides

Drebrin: A
Protein kinase C-binding protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Drebrin

Protein kinase C-binding protein 1

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