SMTL ID : 5y4h.1

Human SIRT3 in complex with halistanol sulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.142, C.145, C.166, C.169 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.142, A:C.145, A:C.166, A:C.169

1 x 8QF: [(2~{S},3~{S},5~{S},6~{S},8~{S},9~{S},10~{R},13~{R},14~{R},17~{R})-17-[(2~{R})-6,6-dimethylheptan-2-yl]-10,13-dimethyl-2,3-disulfooxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-6-yl] hydrogen sulfate(Non-covalent)

8QF.2: 5 residues within 4Å: Chain A: P.185, Q.186, R.187, V.192, V.193 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.192 Hydrogen bonds: A:Q.186 Water bridges: A:R.187, A:R.187 Salt bridges: A:R.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, F. et al., Halistanol sulfates I and J, new SIRT1-3 inhibitory steroid sulfates from a marine sponge of the genus Halichondria. J. Antibiot. (2018)

Release Date

2018-05-16

Peptides

NAD-dependent protein deacetylase sirtuin-3, mitochondrial: A
THr-Arg-Ser-GLY-ALY-VAL-MET-ARG-ARG-LEU-ARG-ARG: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-dependent protein deacetylase sirtuin-3, mitochondrial

THr-Arg-Ser-GLY-ALY-VAL-MET-ARG-ARG-LEU-ARG-ARG

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