SMTL ID : 5y6k.1

Human serum trnasferrin bound to a fluorescent probe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

monomer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 10 residues within 4Å: Chain A: D.392, Y.426, T.452, R.456, T.457, A.458, G.459, Y.517, H.585 Ligands: FE.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.456, A:Y.517 Hydrogen bonds: A:T.457, A:T.457, A:A.458, A:G.459 Salt bridges: A:R.456, A:H.585

2 x FE: FE (III) ION(Non-covalent)

FE.2: 6 residues within 4Å: Chain A: D.392, Y.426, T.457, Y.517, H.585 Ligands: MLI.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.392, A:Y.426, A:Y.517, A:H.585 FE.3: 2 residues within 4Å: Chain A: Y.188 Ligands: 8R6.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Y.188

2 x 8R6: (2S)-6-[2-(7-azido-4-methyl-2-oxidanylidene-chromen-3-yl)ethanoylamino]-2-[bis(2-hydroxy-2-oxoethyl)amino]hexanoic acid(Non-covalent)

8R6.4: 8 residues within 4Å: Chain A: D.63, Y.95, R.124, S.125, Y.188, K.206, K.296 Ligands: FE.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.188, A:K.296 Hydrogen bonds: A:S.125, A:K.206 Water bridges: A:Y.95 Salt bridges: A:R.124, A:K.206, A:K.296 8R6.5: 2 residues within 4Å: Chain A: R.602, Q.603 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.603 Hydrogen bonds: A:R.602 Salt bridges: A:R.602, A:R.602

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, N. et al., Tracking iron-associated proteomes in pathogens by a fluorescence approach. Metallomics (2018)

Release Date

2018-01-24

Peptides

Serotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serotransferrin

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