SMTL ID : 8brc.1

Crystal structure of the adduct between human serum transferrin and cisplatin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.17 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: D.392, Y.426, Y.517, H.585 Ligands: MLI.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.392, A:Y.426, A:Y.517, A:H.585

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 10 residues within 4Å: Chain A: D.392, Y.426, T.452, R.456, T.457, A.458, G.459, Y.517, H.585 Ligands: FE.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.456, A:Y.517 Hydrogen bonds: A:T.457, A:A.458, A:G.459 Salt bridges: A:R.456, A:H.585

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.413, R.581 No protein-ligand interaction detected (PLIP)

1 x PT: PLATINUM (II) ION(Non-covalent)

PT.4: 3 residues within 4Å: Chain A: M.256 Ligands: NH3.5, NH3.6 No protein-ligand interaction detected (PLIP)

2 x NH3: AMMONIA(Non-covalent)(Non-functional Binders)

NH3.5: 3 residues within 4Å: Chain A: M.256 Ligands: PT.4, NH3.6 No protein-ligand interaction detected (PLIP) NH3.6: 2 residues within 4Å: Ligands: PT.4, NH3.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Troisi, R. et al., Cisplatin Binding to Human Serum Transferrin: A Crystallographic Study. Inorg.Chem. (2023)

Release Date

2023-01-18

Peptides

Serotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serotransferrin

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