SMTL ID : 5y6n.1

Zika virus helicase in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: T.22, D.106, E.107 Ligands: ADP.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.22, A:E.107, H2O.2, H2O.2, H2O.3

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: H.16, P.17, G.18, A.19, G.20, K.21, T.22, R.23, N.151, N.238, R.283 Ligands: MN.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.18, A:G.18, A:A.19, A:G.20, A:K.21, A:T.22, A:R.23, A:R.23, A:N.151, A:R.283, A:R.283 Water bridges: A:T.22, A:R.23, A:R.23, A:R.23, A:N.238, A:R.283, A:R.283, A:R.283 Salt bridges: A:K.21, A:R.283 pi-Cation interactions: A:R.23, A:R.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Mechanism of ATP hydrolysis by the Zika virus helicase. FASEB J. (2018)

Release Date

2018-07-04

Peptides

Helicase domain from Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Helicase domain from Genome polyprotein

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