SMTL ID : 5y78.1

Crystal structure of the triose-phosphate/phosphate translocator in complex with inorganic phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: T.99, K.115, F.174, Y.250, K.273, R.274 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.31, A:Y.250, A:Y.250 Water bridges: A:R.177, A:Y.250, A:Y.250, A:N.251, A:N.251, A:N.270, A:N.270, A:K.273 Salt bridges: A:K.115, A:K.273, A:R.274 PO4.19: 7 residues within 4Å: Chain B: T.99, H.112, K.115, F.174, Y.250, K.273, R.274 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.31, B:T.99, B:Y.250 Water bridges: B:R.177, B:R.177, B:Y.250, B:Y.250, B:Y.250, B:N.270, B:N.270, B:N.270, B:K.273, B:K.273 Salt bridges: B:K.115, B:K.273, B:R.274

42 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.2: 17 residues within 4Å: Chain A: A.117, V.120, F.121, L.142, I.145, V.146, V.149, A.150, A.153, A.154, F.159, W.161, F.164, M.168 Chain B: A.150 Ligands: OLC.3, OLC.20 Ligand excluded by PLIP OLC.3: 16 residues within 4Å: Chain A: V.124, W.161, F.164, I.165, M.168 Chain B: Y.139, V.143, V.146, S.147, L.151, A.154, T.155, L.292 Ligands: OLC.2, OLC.9, OLC.15 Ligand excluded by PLIP OLC.4: 5 residues within 4Å: Chain A: G.21, F.24, Y.28, I.272 Ligands: OLC.13 Ligand excluded by PLIP OLC.5: 6 residues within 4Å: Chain A: F.30, Y.62, L.249 Ligands: OLC.11, OLC.14, OLC.18 Ligand excluded by PLIP OLC.6: 7 residues within 4Å: Chain A: G.57, A.60, L.61, T.64, F.208, F.209 Ligands: OLC.7 Ligand excluded by PLIP OLC.7: 5 residues within 4Å: Chain A: W.67, P.75, V.77, L.202 Ligands: OLC.6 Ligand excluded by PLIP OLC.8: 13 residues within 4Å: Chain A: S.109, F.110, V.113, E.156, V.275, I.278, F.279, V.289, N.293, F.294, S.297, T.298, I.301 Ligand excluded by PLIP OLC.9: 9 residues within 4Å: Chain A: F.121, G.125, V.129, T.176, T.180, F.183 Chain B: L.140, V.143 Ligands: OLC.3 Ligand excluded by PLIP OLC.10: 2 residues within 4Å: Chain A: L.292 Ligands: OLC.33 Ligand excluded by PLIP OLC.11: 7 residues within 4Å: Chain A: Y.62, L.66, R.72, Q.197, L.249, E.252 Ligands: OLC.5 Ligand excluded by PLIP OLC.12: 4 residues within 4Å: Chain A: F.32, I.276, V.284 Ligands: OLC.13 Ligand excluded by PLIP OLC.13: 6 residues within 4Å: Chain A: F.25, F.29, F.32, I.276 Ligands: OLC.4, OLC.12 Ligand excluded by PLIP OLC.14: 7 residues within 4Å: Chain A: V.58, L.61, F.65, F.237, M.241 Ligands: OLC.5, OLC.17 Ligand excluded by PLIP OLC.15: 6 residues within 4Å: Chain A: W.161, T.162, I.165, I.169 Ligands: OLC.3, OLC.16 Ligand excluded by PLIP OLC.16: 2 residues within 4Å: Ligands: OLC.15, OLC.25 Ligand excluded by PLIP OLC.17: 7 residues within 4Å: Chain A: V.50, I.54, G.57, V.58, F.208, F.237 Ligands: OLC.14 Ligand excluded by PLIP OLC.18: 3 residues within 4Å: Chain A: F.25, L.26 Ligands: OLC.5 Ligand excluded by PLIP OLC.20: 16 residues within 4Å: Chain A: A.150 Chain B: A.117, V.120, F.121, I.145, V.146, V.149, A.150, A.153, A.154, F.159, W.161, F.164, M.168 Ligands: OLC.2, OLC.21 Ligand excluded by PLIP OLC.21: 12 residues within 4Å: Chain A: Y.139, V.143, V.146, S.147, L.151, A.154, T.155 Chain B: W.161, F.164 Ligands: OLC.20, OLC.23, OLC.24 Ligand excluded by PLIP OLC.22: 5 residues within 4Å: Chain B: Y.23, L.26, Y.62, L.256 Ligands: OLC.38 Ligand excluded by PLIP OLC.23: 4 residues within 4Å: Chain B: M.168, V.172 Ligands: OLC.21, OLC.42 Ligand excluded by PLIP OLC.24: 13 residues within 4Å: Chain A: L.140, V.143 Chain B: F.121, V.124, G.125, V.129, V.175, T.176, I.179, T.180, F.183 Ligands: OLC.21, OLC.35 Ligand excluded by PLIP OLC.25: 6 residues within 4Å: Chain B: V.143, P.144, S.147, L.292, I.299 Ligands: OLC.16 Ligand excluded by PLIP OLC.26: 13 residues within 4Å: Chain B: S.109, F.110, V.113, E.156, I.272, V.275, I.278, F.279, V.289, N.293, F.294, S.297, T.298 Ligand excluded by PLIP OLC.27: 7 residues within 4Å: Chain B: G.57, L.61, T.64, F.208, F.209 Ligands: OLC.40, OLC.41 Ligand excluded by PLIP OLC.28: 5 residues within 4Å: Chain B: W.49, L.90, T.93, M.210, F.214 Ligand excluded by PLIP OLC.29: 6 residues within 4Å: Chain B: F.24, F.25, Y.28, S.265, G.269, I.272 Ligand excluded by PLIP OLC.30: 5 residues within 4Å: Chain B: F.25, Y.28, F.29, F.32, I.276 Ligand excluded by PLIP OLC.31: 5 residues within 4Å: Chain B: Y.62, F.65, G.238, M.241 Ligands: OLC.43 Ligand excluded by PLIP OLC.32: 3 residues within 4Å: Chain B: W.161, T.162, I.165 Ligand excluded by PLIP OLC.33: 2 residues within 4Å: Ligands: OLC.10, OLC.42 Ligand excluded by PLIP OLC.34: 3 residues within 4Å: Chain B: F.25, L.26, F.29 Ligand excluded by PLIP OLC.35: 4 residues within 4Å: Chain B: W.87, T.176 Ligands: OLC.24, OLC.37 Ligand excluded by PLIP OLC.36: 6 residues within 4Å: Chain B: F.32, I.276, F.279, G.280, L.283, V.284 Ligand excluded by PLIP OLC.37: 4 residues within 4Å: Chain B: K.83, I.86, W.87 Ligands: OLC.35 Ligand excluded by PLIP OLC.38: 4 residues within 4Å: Chain B: L.71, R.72, Q.197 Ligands: OLC.22 Ligand excluded by PLIP OLC.39: 2 residues within 4Å: Chain B: L.69, L.71 Ligand excluded by PLIP OLC.40: 6 residues within 4Å: Chain B: W.67, P.75, I.205, I.206 Ligands: OLC.27, OLC.44 Ligand excluded by PLIP OLC.41: 2 residues within 4Å: Chain B: V.68 Ligands: OLC.27 Ligand excluded by PLIP OLC.42: 7 residues within 4Å: Chain B: L.94, I.169, V.172, A.173, T.176 Ligands: OLC.23, OLC.33 Ligand excluded by PLIP OLC.43: 4 residues within 4Å: Chain B: A.234, F.237, G.238 Ligands: OLC.31 Ligand excluded by PLIP OLC.44: 4 residues within 4Å: Chain B: P.75, N.76, V.77 Ligands: OLC.40 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y. et al., Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity. Nat Plants (2017)

Release Date

2017-10-04

Peptides

Putative hexose phosphate translocator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Putative hexose phosphate translocator

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