SMTL ID : 5y79.1

Crystal structure of the triose-phosphate/phosphate translocator in complex with 3-phosphoglycerate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

32 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 17 residues within 4Å: Chain A: A.117, V.120, F.121, L.142, I.145, V.146, V.149, A.150, A.153, A.154, F.159, W.161, F.164, M.168 Chain B: V.146 Ligands: OLC.18, OLC.19 Ligand excluded by PLIP OLC.2: 4 residues within 4Å: Chain A: S.147, L.292, I.299 Ligands: OLC.23 Ligand excluded by PLIP OLC.3: 5 residues within 4Å: Chain A: W.67, K.74, P.75, L.202 Ligands: OLC.4 Ligand excluded by PLIP OLC.4: 6 residues within 4Å: Chain A: G.57, A.60, L.61, T.64, F.208 Ligands: OLC.3 Ligand excluded by PLIP OLC.5: 15 residues within 4Å: Chain A: S.109, F.110, V.113, E.156, V.275, I.278, F.279, I.282, V.289, N.293, F.294, S.297, T.298, I.301, M.305 Ligand excluded by PLIP OLC.6: 6 residues within 4Å: Chain A: L.26, F.30, Y.62, L.249, V.253 Ligands: OLC.14 Ligand excluded by PLIP OLC.7: 11 residues within 4Å: Chain A: F.121, V.124, G.125, V.129, T.176, I.179, T.180, F.183 Chain B: Y.139, V.143 Ligands: OLC.19 Ligand excluded by PLIP OLC.8: 5 residues within 4Å: Chain A: F.32, I.276, G.280, L.283, V.284 Ligand excluded by PLIP OLC.9: 4 residues within 4Å: Chain A: F.24, F.25, Y.28 Ligands: OLC.10 Ligand excluded by PLIP OLC.10: 6 residues within 4Å: Chain A: F.25, Y.28, F.29, F.32, I.276 Ligands: OLC.9 Ligand excluded by PLIP OLC.11: 3 residues within 4Å: Chain A: L.140, T.141, P.144 Ligand excluded by PLIP OLC.12: 5 residues within 4Å: Chain A: V.58, L.61, Y.62, M.241 Ligands: OLC.15 Ligand excluded by PLIP OLC.13: 5 residues within 4Å: Chain A: M.168 Chain B: V.143, S.147 Ligands: OLC.19, OLC.21 Ligand excluded by PLIP OLC.14: 7 residues within 4Å: Chain A: Y.62, L.66, L.71, R.72, L.249, E.252 Ligands: OLC.6 Ligand excluded by PLIP OLC.15: 7 residues within 4Å: Chain A: V.50, I.54, V.58, F.208, L.216, F.237 Ligands: OLC.12 Ligand excluded by PLIP OLC.18: 14 residues within 4Å: Chain A: V.146, A.150 Chain B: A.117, V.120, I.145, V.149, A.153, A.154, F.159, W.161, F.164, M.168 Ligands: OLC.1, OLC.20 Ligand excluded by PLIP OLC.19: 14 residues within 4Å: Chain A: V.120, W.161, F.164, I.165 Chain B: V.143, V.146, S.147, L.151, A.154, T.155, L.292 Ligands: OLC.1, OLC.7, OLC.13 Ligand excluded by PLIP OLC.20: 10 residues within 4Å: Chain A: V.143, V.146, S.147, A.150, L.151, A.154 Chain B: W.161 Ligands: OLC.18, OLC.23, OLC.30 Ligand excluded by PLIP OLC.21: 4 residues within 4Å: Chain B: L.151, L.292, I.299 Ligands: OLC.13 Ligand excluded by PLIP OLC.22: 13 residues within 4Å: Chain B: S.109, F.110, V.113, E.156, I.278, F.279, I.282, N.293, F.294, S.297, T.298, I.301, M.305 Ligand excluded by PLIP OLC.23: 5 residues within 4Å: Chain B: F.121, M.168, V.172 Ligands: OLC.2, OLC.20 Ligand excluded by PLIP OLC.24: 3 residues within 4Å: Chain B: F.32, F.279, G.280 Ligand excluded by PLIP OLC.25: 3 residues within 4Å: Chain B: W.87, T.176 Ligands: OLC.30 Ligand excluded by PLIP OLC.26: 1 residues within 4Å: Chain B: I.302 Ligand excluded by PLIP OLC.27: 3 residues within 4Å: Chain B: F.30, Y.62 Ligands: OLC.33 Ligand excluded by PLIP OLC.28: 5 residues within 4Å: Chain B: F.25, Y.28, F.29, F.32, I.276 Ligand excluded by PLIP OLC.29: 5 residues within 4Å: Chain B: I.54, G.57, T.64, V.68, F.208 Ligand excluded by PLIP OLC.30: 13 residues within 4Å: Chain A: Y.139, L.140, V.143 Chain B: F.121, V.124, G.125, V.129, T.176, I.179, T.180, F.183 Ligands: OLC.20, OLC.25 Ligand excluded by PLIP OLC.31: 5 residues within 4Å: Chain B: I.36, A.37, R.40, S.239, F.242 Ligand excluded by PLIP OLC.32: 3 residues within 4Å: Chain B: K.233, A.234, F.237 Ligand excluded by PLIP OLC.33: 5 residues within 4Å: Chain B: Y.62, L.66, L.71, R.72 Ligands: OLC.27 Ligand excluded by PLIP OLC.34: 8 residues within 4Å: Chain B: G.21, F.24, F.25, Y.28, S.265, I.268, G.269, I.272 Ligand excluded by PLIP

2 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.16: 10 residues within 4Å: Chain A: F.34, H.96, T.99, F.103, K.115, F.174, Y.247, Y.250, K.273, R.274 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.31, A:Y.250 Water bridges: A:R.177, A:Y.250, A:N.251, A:N.270, A:N.270, A:K.273 Salt bridges: A:H.96, A:K.115, A:K.273, A:R.274 3PG.35: 10 residues within 4Å: Chain B: F.34, H.96, T.99, F.103, K.115, F.174, Y.247, Y.250, K.273, R.274 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Y.250, B:Y.250 Water bridges: B:N.31, B:R.177, B:R.177, B:N.270, B:N.270, B:N.270, B:K.273 Salt bridges: B:H.96, B:K.115, B:K.273, B:R.274

1 x FLC: CITRATE ANION(Non-covalent)

FLC.17: 3 residues within 4Å: Chain A: R.72, T.73, K.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.74 Water bridges: A:K.74, A:K.74 Salt bridges: A:K.74, A:K.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y. et al., Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity. Nat Plants (2017)

Release Date

2017-10-04

Peptides

Putative hexose phosphate translocator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Putative hexose phosphate translocator

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