SMTL ID : 5y8x.1

Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with Azaserine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: D.125 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.125, H2O.7, H2O.8, H2O.10 CA.4: 2 residues within 4Å: Chain A: H.277 Chain B: E.100 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:E.100, A:H.277, H2O.7, H2O.13, H2O.13 CA.5: 1 residues within 4Å: Chain B: E.125 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:E.125, H2O.12, H2O.13, H2O.14, H2O.14, H2O.15

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.111, R.263, Y.264, E.265 Chain B: N.57 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.263, A:R.263, A:E.265, A:E.265, B:N.57 Water bridges: A:R.111 GOL.3: 6 residues within 4Å: Chain A: S.132, S.135, R.136, H.190, K.193 Chain B: Q.22 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.132, A:S.135, A:R.136, A:H.190, A:K.193, B:Q.22 Water bridges: B:L.23

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain B: T.120, S.121, Y.122, K.142, G.144 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.120, B:Y.122

1 x AZS: O-DIAZOACETYL-L-SERINE(Non-covalent)

AZS.7: 12 residues within 4Å: Chain A: R.109 Chain B: T.1, T.19, E.21, E.40, D.43, S.62, S.63, M.64, P.82, G.83, G.84 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.1, B:E.21, B:E.40, B:D.43, B:S.63, B:S.63, B:M.64, B:G.83, B:G.84 Water bridges: B:T.1 Salt bridges: A:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goel, M. et al., Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with Azaserine. To Be Published

Release Date

2018-10-17

Peptides

Gamma glutamyl transpeptidase: A
Gamma glutamyl transpeptidase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma glutamyl transpeptidase

Gamma glutamyl transpeptidase

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