SMTL ID : 5y9b.1

Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with DON

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: H.277 Chain B: E.100 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:H.277, B:E.100, H2O.4, H2O.5, H2O.5 CA.2: 2 residues within 4Å: Chain B: E.125, D.170 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:E.125, H2O.3, H2O.4, H2O.5, H2O.5, H2O.6

1 x DON: 6-DIAZENYL-5-OXO-L-NORLEUCINE(Covalent)

DON.3: 12 residues within 4Å: Chain A: R.109 Chain B: T.1, T.19, E.21, E.40, D.43, S.62, S.63, M.64, P.82, G.83, G.84 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.21, B:E.40, B:D.43, B:S.63, B:S.63, B:M.64, B:G.83, B:G.84 Salt bridges: A:R.109

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain B: T.120, S.121, Y.122, K.142, G.144 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.122 Water bridges: B:G.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goel, M. et al., Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with Azaserine. To Be Published

Release Date

2018-08-29

Peptides

Gamma glutamyl transpeptidase: A
Gamma glutamyl transpeptidase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma glutamyl transpeptidase

Gamma glutamyl transpeptidase

Related Entries With Identical Sequence