SMTL ID : 5y91.1

The structure of the MHC class I molecule of bony fishes provides insights into the conserved nature of the antigen-presenting system

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PHE- ALA- ASN- PHE- CYS- LEU- MET- MET- ILE: PEPTIDE PHE-ALA-ASN-PHE-CYS-LEU-MET-MET-ILE(Non-covalent)

PHE-ALA-ASN-PHE-CYS-LEU-MET-MET-ILE.1: 25 residues within 4Å: Chain A: L.5, Y.7, Y.9, Y.57, R.60, Q.61, V.64, A.68, V.71, D.74, S.75, I.78, V.79, W.92, Y.96, Y.110, T.139, K.142, W.143, L.146, Q.151, N.152, Y.155, W.163, Y.167 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.57, A:R.60, A:Q.61, A:V.64, A:A.68, A:V.79, A:W.92, A:T.139, A:W.143, A:Y.155, A:W.163 Hydrogen bonds: A:Y.7, A:Q.61, A:Q.61, A:S.75, A:Y.96, A:Y.96, A:Y.110, A:Y.110, A:T.139, A:K.142, A:Q.151, A:Y.155, A:Y.167 Water bridges: A:Y.112, A:N.152, A:N.152 Salt bridges: A:R.82, A:K.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhaosan, C. et al., Crystal structure of bony fish MHC class I complex at 1.9 Angstroms resolution. To Be Published

Release Date

2017-09-20

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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