SMTL ID : 6lbe.1 (1 other biounit)

Crystal structure of bony fish MHC class I binding beta2M-2 for 2.6 angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PHE- ALA- ASN- PHE- CYS- LEU- MET- MET- ILE: 9-mer peptide from RNA-DIRECTED RNA POLYMERASE L(Non-covalent)

PHE-ALA-ASN-PHE-CYS-LEU-MET-MET-ILE.1: 25 residues within 4Å: Chain A: L.5, Y.7, Y.9, Y.57, R.60, Q.61, V.64, A.68, V.71, S.75, I.78, R.82, W.92, Y.96, Y.110, T.139, K.142, W.143, L.146, V.148, Q.151, N.152, Y.155, W.163, Y.167 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.57, A:R.60, A:Q.61, A:I.78, A:W.92, A:W.143, A:V.148, A:Q.151, A:Y.155, A:W.163 Hydrogen bonds: A:Q.61, A:Q.61, A:S.75, A:Y.96, A:T.139, A:K.142, A:Q.151, A:Q.151, A:Y.155, A:Y.167 Water bridges: A:Y.57, A:Y.110, A:Y.112 Salt bridges: A:R.82, A:K.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., The Mechanism of beta 2m Molecule-Induced Changes in the Peptide Presentation Profile in a Bony Fish. Iscience (2020)

Release Date

2020-11-04

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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