SMTL ID : 5yaw.1

Fragment-based Drug Discovery of inhibitors to block PDEdelta-RAS protein-protein interaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x 8SL: 3-[(4-methoxyphenyl)methylsulfanyl]-5-(2-methylpropyl)-4-(phenylmethyl)-1,2,4-triazole(Non-covalent)

8SL.1: 18 residues within 4Å: Chain A: F.15, L.17, M.20, L.22, W.32, L.38, S.39, A.47, V.49, R.61, L.63, F.74, L.76, Q.78, I.109, T.131, F.133, L.147 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.17, A:L.22, A:L.38, A:A.47, A:V.49, A:L.63, A:L.63, A:I.109, A:T.131, A:L.147 Hydrogen bonds: A:R.61, A:Q.78 pi-Stacking: A:W.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bing, X. et al., Fragment-based Drug Discovery of inhibitors to block PDEdelta-RAS protein-protein interaction. To Be Published

Release Date

2018-09-05

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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