SMTL ID : 5yco.1 (1 other biounit)

Complex structure of PCNA with UHRF2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-3-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Q.8, S.10, I.11, K.14, P.220, L.221, A.242 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.8, A:S.10, A:L.221, A:A.242 GOL.4: 8 residues within 4Å: Chain B: Q.8, S.10, I.11, K.14, P.220, L.221, I.241, A.242 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.8, B:S.10, B:K.14, B:A.242 Water bridges: B:L.221, B:K.240 GOL.7: 7 residues within 4Å: Chain C: Q.8, S.10, I.11, K.14, L.221, I.241, A.242 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.8, C:S.10, C:A.242 Water bridges: C:K.14

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.53, G.245, H.246 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.53, A:G.245 Salt bridges: A:R.53, A:H.246 SO4.3: 4 residues within 4Å: Chain A: A.82, G.83, N.84 Chain B: R.146 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.84, A:N.84 Water bridges: A:K.13, A:E.85 Salt bridges: B:R.146 SO4.5: 3 residues within 4Å: Chain B: R.53, G.245, H.246 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.238 Salt bridges: B:R.53, B:H.246 SO4.6: 4 residues within 4Å: Chain B: A.82, G.83, N.84 Chain C: R.146 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.84, B:N.84 Water bridges: B:E.85 Salt bridges: C:R.146 SO4.8: 5 residues within 4Å: Chain C: R.53, E.238, K.240, G.245, H.246 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.245 Water bridges: C:R.53, C:G.245 Salt bridges: C:R.53, C:K.240, C:H.246 SO4.9: 4 residues within 4Å: Chain A: R.146 Chain C: A.82, G.83, N.84 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:N.84, C:N.84 Water bridges: C:K.13, C:E.85 Salt bridges: A:R.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, W. et al., Structure insights into the molecular mechanism of the interaction between UHRF2 and PCNA. Biochem. Biophys. Res. Commun. (2017)

Release Date

2017-11-15

Peptides

Proliferating cell nuclear antigen: ABC
E3 ubiquitin-protein ligase UHRF2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
F

Proliferating cell nuclear antigen

E3 ubiquitin-protein ligase UHRF2

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