SMTL ID : 5yco.2 (1 other biounit)

Complex structure of PCNA with UHRF2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-3-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain B: Q.8, S.10, I.11, K.14, P.220, L.221, I.241, A.242 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.10, B:K.14, B:A.242 Water bridges: B:L.221, B:K.240 GOL.4: 8 residues within 4Å: Chain C: Q.8, S.10, I.11, K.14, P.220, L.221, I.241, A.242 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.10, C:K.14, C:A.242 Water bridges: C:L.221, C:K.240 GOL.7: 8 residues within 4Å: Chain D: Q.8, S.10, I.11, K.14, P.220, L.221, I.241, A.242 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.10, D:K.14, D:A.242 Water bridges: D:L.221, D:K.240

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain B: R.53, G.245, H.246 4 PLIP interactions: 4 interactions with chain B Water bridges: B:M.244, B:G.245 Salt bridges: B:R.53, B:H.246 SO4.3: 4 residues within 4Å: Chain B: A.82, G.83, N.84 Chain C: R.146 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B Salt bridges: C:R.146 Hydrogen bonds: B:N.84, B:N.84 Water bridges: B:K.13, B:E.85 SO4.5: 3 residues within 4Å: Chain C: R.53, G.245, H.246 4 PLIP interactions: 4 interactions with chain C Water bridges: C:M.244, C:G.245 Salt bridges: C:R.53, C:H.246 SO4.6: 4 residues within 4Å: Chain C: A.82, G.83, N.84 Chain D: R.146 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:N.84, C:N.84 Water bridges: C:K.13, C:E.85 Salt bridges: D:R.146 SO4.8: 3 residues within 4Å: Chain D: R.53, G.245, H.246 4 PLIP interactions: 4 interactions with chain D Water bridges: D:M.244, D:G.245 Salt bridges: D:R.53, D:H.246 SO4.9: 4 residues within 4Å: Chain B: R.146 Chain D: A.82, G.83, N.84 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:N.84, D:N.84 Water bridges: D:K.13, D:E.85 Salt bridges: B:R.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, W. et al., Structure insights into the molecular mechanism of the interaction between UHRF2 and PCNA. Biochem. Biophys. Res. Commun. (2017)

Release Date

2017-11-15

Peptides

E3 ubiquitin-protein ligase UHRF2: A
Proliferating cell nuclear antigen: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
B

C
B

D
B

E3 ubiquitin-protein ligase UHRF2

Proliferating cell nuclear antigen

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