SMTL ID : 5yd7.2 (1 other biounit)

Crystal Structure OF VIM-2 Metallo-beta-lactamase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.98, R.99, C.178, H.220 Ligands: ZN.2, FMT.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.98, A:C.178, A:H.220, H2O.2 ZN.2: 4 residues within 4Å: Chain A: H.94, H.96, H.159 Ligands: ZN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.94, A:H.96, A:H.159, H2O.1, H2O.2 ZN.3: 3 residues within 4Å: Chain A: H.133 Ligands: FMT.4, FMT.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.133

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 6 residues within 4Å: Chain A: A.112, T.113, T.132, H.133 Ligands: ZN.3, FMT.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.113, A:T.132 FMT.5: 4 residues within 4Å: Chain A: A.112, H.133 Ligands: ZN.3, FMT.4 No protein-ligand interaction detected (PLIP) FMT.6: 6 residues within 4Å: Chain A: H.159, C.178, G.189, N.190, H.220 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.190 Water bridges: A:G.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wachino, J., Crystal Structure Of VIM-2 Metallo-beta-lactamase. To Be Published

Release Date

2018-09-19

Peptides

Beta-lactamase class B VIM-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-lactamase class B VIM-2

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