SMTL ID : 8i52.1 (1 other biounit)

Crystal structure of VIM-2 metallo-beta-lactamase in complex with 10-HHIA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.98, R.99, C.178, H.220 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.98, A:C.178, A:H.220 ZN.2: 5 residues within 4Å: Chain A: H.94, H.96, D.98, H.159 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.94, A:H.96, A:H.159 ZN.3: 3 residues within 4Å: Chain A: H.231 Ligands: FMT.4, FMT.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.231

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 4 residues within 4Å: Chain A: H.231, N.234 Ligands: ZN.3, FMT.5 No protein-ligand interaction detected (PLIP) FMT.5: 3 residues within 4Å: Chain A: H.231 Ligands: ZN.3, FMT.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.231, A:H.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wachino, J., Crystal structure of VIM-2 Metallo-beta-lactamase in complex with 10-HHIA. To Be Published

Release Date

2024-01-10

Peptides

Beta-lactamase class B VIM-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase class B VIM-2

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