SMTL ID : 5yev.1 (3 other biounits)

Murine DR3 death domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.411 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.411 SO4.2: 9 residues within 4Å: Chain A: W.423, R.424, A.429, G.430, L.431, G.432, A.433, I.434, Y.435 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.430, A:L.431, A:G.432, A:A.433, A:I.434 Salt bridges: A:R.424 SO4.3: 4 residues within 4Å: Chain A: R.371, A.372, A.373, Y.417 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.372, A:A.373, A:Y.417 SO4.4: 5 residues within 4Å: Chain A: N.151, Q.153, E.154, D.210, Y.211 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.151, A:E.154, A:Y.211, A:S.212 SO4.5: 2 residues within 4Å: Chain A: N.186, A.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.187 Water bridges: A:G.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, X. et al., Crystal structure and activation mechanism of DR3 death domain. Febs J. (2019)

Release Date

2018-09-19

Peptides

TNFRSF25 death domain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TNFRSF25 death domain

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