SMTL ID : 5yev.2 (3 other biounits)

Murine DR3 death domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.411, F.412 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.412 Salt bridges: A:R.411 SO4.2: 8 residues within 4Å: Chain A: W.423, R.424, A.429, G.430, L.431, G.432, A.433, I.434 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.430, A:L.431, A:G.432, A:A.433, A:I.434 Water bridges: A:R.424, A:R.424 Salt bridges: A:R.424 SO4.3: 4 residues within 4Å: Chain A: A.370, R.371, A.372, A.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.371, A:A.372, A:A.373 SO4.4: 3 residues within 4Å: Chain A: A.78, E.79, K.274 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.79 Salt bridges: A:K.274 SO4.5: 2 residues within 4Å: Chain A: N.186, A.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, X. et al., Crystal structure and activation mechanism of DR3 death domain. Febs J. (2019)

Release Date

2018-09-19

Peptides

TNFRSF25 death domain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

TNFRSF25 death domain

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