- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RI2: 1,5-di-O-phosphono-alpha-D-ribofuranose(Non-covalent)
- 6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 14 residues within 4Å:- Chain A: R.124, R.229, W.231, D.290
- Chain B: T.207, N.209, A.211, L.250, V.251, V.283, P.285, P.286
- Chain E: R.190, K.194
11 PLIP interactions:3 interactions with chain B, 5 interactions with chain A, 3 interactions with chain E- Hydrogen bonds: B:N.209, B:V.251, B:V.251, A:R.124, A:R.124, A:R.229, A:D.290
- Salt bridges: A:R.229, E:R.190, E:K.194
- Water bridges: E:H.228
AMP.6: 14 residues within 4Å:- Chain B: R.124, R.229, W.231, D.290
- Chain C: T.207, N.209, A.211, L.250, V.251, V.283, P.285, P.286
- Chain D: R.190, K.194
10 PLIP interactions:5 interactions with chain B, 2 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: B:R.124, B:R.124, B:R.229, B:D.290, C:N.209, C:V.251, C:V.251
- Salt bridges: B:R.229, D:R.190, D:K.194
AMP.9: 14 residues within 4Å:- Chain A: T.207, N.209, A.211, L.250, V.251, V.283, P.285, P.286
- Chain C: R.124, R.229, W.231, D.290
- Chain F: R.190, K.194
10 PLIP interactions:5 interactions with chain C, 3 interactions with chain A, 2 interactions with chain F- Hydrogen bonds: C:R.124, C:D.290, A:N.209, A:V.251, A:V.251
- Water bridges: C:R.124, C:R.124
- Salt bridges: C:R.229, F:R.190, F:K.194
AMP.12: 14 residues within 4Å:- Chain B: R.190, K.194
- Chain D: R.124, R.229, W.231, D.290
- Chain E: T.207, N.209, A.211, L.250, V.251, V.283, P.285, P.286
11 PLIP interactions:3 interactions with chain B, 3 interactions with chain E, 5 interactions with chain D- Water bridges: B:H.228
- Salt bridges: B:R.190, B:K.194, D:R.229
- Hydrogen bonds: E:N.209, E:V.251, E:V.251, D:R.124, D:R.124, D:R.229, D:D.290
AMP.16: 14 residues within 4Å:- Chain A: R.190, K.194
- Chain E: R.124, R.229, W.231, D.290
- Chain F: T.207, N.209, A.211, L.250, V.251, V.283, P.285, P.286
10 PLIP interactions:3 interactions with chain F, 5 interactions with chain E, 2 interactions with chain A- Hydrogen bonds: F:N.209, F:V.251, F:V.251, E:R.124, E:R.124, E:R.229, E:D.290
- Salt bridges: E:R.229, A:R.190, A:K.194
AMP.19: 14 residues within 4Å:- Chain C: R.190, K.194
- Chain D: T.207, N.209, A.211, L.250, V.251, V.283, P.285, P.286
- Chain F: R.124, R.229, W.231, D.290
10 PLIP interactions:2 interactions with chain C, 4 interactions with chain F, 4 interactions with chain D- Salt bridges: C:R.190, C:K.194, F:R.229
- Hydrogen bonds: F:R.124, F:D.290, D:N.209, D:V.251, D:V.251
- Water bridges: F:R.124, D:T.207
- 6 x K: POTASSIUM ION(Non-covalent)
K.3: 4 residues within 4Å:- Chain A: M.193, K.194, T.196, V.230
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:K.194, A:T.196
K.7: 4 residues within 4Å:- Chain B: M.193, K.194, T.196, V.230
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.196
K.10: 4 residues within 4Å:- Chain C: M.193, K.194, T.196, V.230
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:K.194, C:T.196
K.13: 4 residues within 4Å:- Chain D: M.193, K.194, T.196, V.230
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:K.194, D:T.196
K.17: 4 residues within 4Å:- Chain E: M.193, K.194, T.196, V.230
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:T.196
K.20: 4 residues within 4Å:- Chain F: M.193, K.194, T.196, V.230
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:K.194, F:T.196
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 4 residues within 4Å:- Chain A: E.227, Y.288
- Chain F: E.227, Y.288
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:Y.288
MPD.14: 4 residues within 4Å:- Chain C: E.227, Y.288
- Chain D: E.227, Y.288
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:Y.288
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gogoi, P. et al., A presumed homologue of the regulatory subunits of eIF2B functions as ribose-1,5-bisphosphate isomerase in Pyrococcus horikoshii OT3. Sci Rep (2018)
- Release Date
- 2018-02-14
- Peptides
- Ribose-1,5-bisphosphate isomerase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RI2: 1,5-di-O-phosphono-alpha-D-ribofuranose(Non-covalent)
- 6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 6 x K: POTASSIUM ION(Non-covalent)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gogoi, P. et al., A presumed homologue of the regulatory subunits of eIF2B functions as ribose-1,5-bisphosphate isomerase in Pyrococcus horikoshii OT3. Sci Rep (2018)
- Release Date
- 2018-02-14
- Peptides
- Ribose-1,5-bisphosphate isomerase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C