- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RI2: 1,5-di-O-phosphono-alpha-D-ribofuranose(Non-covalent)
- 6 x K: POTASSIUM ION(Non-covalent)
K.2: 4 residues within 4Å:- Chain A: M.193, K.194, T.196, V.230
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:K.194, A:T.196, H2O.5, H2O.31
K.8: 4 residues within 4Å:- Chain B: M.193, K.194, T.196, V.230
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:M.193, B:K.194, B:T.196, H2O.11
K.12: 4 residues within 4Å:- Chain C: M.193, K.194, T.196, V.230
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:M.193, C:K.194, C:T.196, H2O.16, H2O.18
K.14: 4 residues within 4Å:- Chain D: M.193, K.194, T.196, V.230
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:K.194, D:T.196, H2O.11, H2O.25
K.20: 4 residues within 4Å:- Chain E: M.193, K.194, T.196, V.230
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:M.193, E:K.194, E:T.196, H2O.30
K.24: 4 residues within 4Å:- Chain F: M.193, K.194, T.196, V.230
5 PLIP interactions:3 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:M.193, F:K.194, F:T.196, H2O.35, H2O.37
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 6 residues within 4Å:- Chain A: L.223, K.226, E.227, Y.288
- Chain F: L.223, E.227
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.223, A:K.226
- Hydrogen bonds: A:Y.288, A:Y.288
MPD.15: 6 residues within 4Å:- Chain C: L.223, E.227
- Chain D: L.223, K.226, E.227, Y.288
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:L.223, D:K.226
- Hydrogen bonds: D:Y.288
- 10 x G: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
G.4: 9 residues within 4Å:- Chain A: P.258, E.264, L.267, R.268, W.270, P.271, I.274, E.275, V.276
40 PLIP interactions:10 interactions with chain A, 13 interactions with chain B, 8 interactions with chain C, 3 interactions with chain D, 2 interactions with chain F, 4 interactions with chain E- Hydrogen bonds: A:R.124, A:R.124, A:N.209, A:R.229, A:V.251, A:W.270, A:I.274, A:V.276, A:D.290, B:R.124, B:R.124, B:N.209, B:R.229, B:V.251, B:W.270, B:I.274, B:V.276, B:D.290, C:R.124, C:R.124, C:T.207, C:N.209, C:V.251, C:D.290, C:D.290
- Salt bridges: A:R.229, B:R.229, C:R.229, D:R.190, F:R.190, F:K.194, E:R.190, E:K.194
- Water bridges: B:E.264, B:R.268, B:W.270, D:R.190, D:H.228, E:R.190, E:K.194
G.5: 13 residues within 4Å:- Chain A: T.207, N.209, A.211, L.250, V.251, V.283, P.285
- Chain C: R.124, R.229, W.231, D.290
- Chain F: R.190, K.194
Protein-ligand interaction information (PLIP) not availableG.6: 13 residues within 4Å:- Chain A: R.124, R.229, W.231, D.290
- Chain B: T.207, N.209, A.211, L.250, V.251, V.283, P.285
- Chain E: R.190, K.194
Protein-ligand interaction information (PLIP) not availableG.9: 10 residues within 4Å:- Chain B: P.258, T.259, E.264, L.267, R.268, W.270, P.271, I.274, E.275, V.276
Protein-ligand interaction information (PLIP) not availableG.10: 12 residues within 4Å:- Chain B: R.124, R.229, W.231, D.290
- Chain C: T.207, N.209, A.211, L.250, V.251, V.283, P.285
- Chain D: R.190
Protein-ligand interaction information (PLIP) not availableG.16: 9 residues within 4Å:- Chain D: P.258, E.264, L.267, R.268, W.270, P.271, I.274, E.275, V.276
40 PLIP interactions:6 interactions with chain F, 14 interactions with chain E, 3 interactions with chain B, 12 interactions with chain D, 2 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: F:R.124, F:R.124, F:N.209, F:V.251, F:D.290, E:R.124, E:R.124, E:T.207, E:N.209, E:R.229, E:V.251, E:W.270, E:I.274, E:V.276, E:D.290, E:D.290, D:R.124, D:R.124, D:T.207, D:N.209, D:R.229, D:V.251, D:W.270, D:I.274, D:V.276, D:D.290, D:D.290
- Salt bridges: F:R.229, E:R.229, B:R.190, B:K.194, D:R.229, C:R.190, C:K.194, A:R.190
- Water bridges: E:R.268, E:W.270, B:K.194, A:R.190, A:H.228
G.17: 13 residues within 4Å:- Chain C: R.190, K.194
- Chain D: T.207, N.209, A.211, L.250, V.251, V.283, P.285
- Chain F: R.124, R.229, W.231, D.290
Protein-ligand interaction information (PLIP) not availableG.18: 13 residues within 4Å:- Chain B: R.190, K.194
- Chain D: R.124, R.229, W.231, D.290
- Chain E: T.207, N.209, A.211, L.250, V.251, V.283, P.285
Protein-ligand interaction information (PLIP) not availableG.21: 10 residues within 4Å:- Chain E: P.258, T.259, E.264, L.267, R.268, W.270, P.271, I.274, E.275, V.276
Protein-ligand interaction information (PLIP) not availableG.22: 12 residues within 4Å:- Chain A: R.190
- Chain E: R.124, R.229, W.231, D.290
- Chain F: T.207, N.209, A.211, L.250, V.251, V.283, P.285
Protein-ligand interaction information (PLIP) not available- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gogoi, P. et al., A presumed homologue of the regulatory subunits of eIF2B functions as ribose-1,5-bisphosphate isomerase in Pyrococcus horikoshii OT3. Sci Rep (2018)
- Release Date
- 2018-02-14
- Peptides
- Ribose 1,5-bisphosphate isomerase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x RI2: 1,5-di-O-phosphono-alpha-D-ribofuranose(Non-covalent)
- 6 x K: POTASSIUM ION(Non-covalent)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 10 x G: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gogoi, P. et al., A presumed homologue of the regulatory subunits of eIF2B functions as ribose-1,5-bisphosphate isomerase in Pyrococcus horikoshii OT3. Sci Rep (2018)
- Release Date
- 2018-02-14
- Peptides
- Ribose 1,5-bisphosphate isomerase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C