SMTL ID : 5yjp.1

Human chymase in complex with 3-(ethoxyimino)-7-oxo-1,4-diazepane derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.59, T.61, E.62, T.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.139, A:D.139 NAG.2: 2 residues within 4Å: Chain A: N.82, T.85 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.85

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 2 residues within 4Å: Chain A: H.10, E.64 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.10, A:E.64

1 x 8W6: 4-((R)-1-((R,Z)-6-(5-chloro-2-methoxybenzyl)-3-(ethoxyimino)-7-oxo-1,4-diazepane-1-carboxamido)propyl)benzoic acid(Non-covalent)

8W6.4: 19 residues within 4Å: Chain A: F.29, C.30, H.45, Y.81, L.86, D.89, R.130, A.177, F.178, K.179, G.180, S.182, V.196, S.197, Y.198, G.199, R.200, S.201, A.207 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.86, A:F.178, A:K.179 Hydrogen bonds: A:G.180 Water bridges: A:S.182, A:S.182, A:G.199 Salt bridges: A:R.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Futamura-Takahashi, J. et al., Structure-based design, synthesis, and binding mode analysis of novel and potent chymase inhibitors. Bioorg. Med. Chem. Lett. (2018)

Release Date

2017-12-27

Peptides

human chymase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

human chymase

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