SMTL ID : 5ykh.1

Crystal structure of the engineered nine-repeat PUF domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: P.232, H.233, Y.237, H.271 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.232 Water bridges: A:Q.274 Salt bridges: A:H.233, A:H.271 PO4.2: 4 residues within 4Å: Chain A: S.26, R.27, L.28, H.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.27, A:L.28 Salt bridges: A:R.27, A:H.48 PO4.3: 2 residues within 4Å: Chain A: R.60, K.100 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.60, A:K.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y.Y. et al., Expanding RNA binding specificity and affinity of engineered PUF domains. Nucleic Acids Res. (2018)

Release Date

2018-03-14

Peptides

Pumilio homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pumilio homolog 1

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