SMTL ID : 5yof.1

Crystal structure of zika virus NS3 protease in complex with a dipeptide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7HS: (S)-2-acetamido-6-amino-N-((S)-5-guanidino-1-oxopentan-2-yl)hexanamide(Covalent)

7HS.1: 14 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.52, D.76, D.130, Y.131, P.132, A.133, S.136, G.152, N.153, G.154, Y.162 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:H.52, B:Y.162 Hydrogen bonds: B:Y.131, B:Y.131, B:G.152, B:G.154, A:S.38 Water bridges: B:D.130 Salt bridges: B:D.130 pi-Cation interactions: B:Y.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Structural Insights into the Inhibition of Zika Virus NS2B-NS3 Protease by a Small-Molecule Inhibitor. Structure (2018)

Release Date

2018-03-21

Peptides

NS2B cofactor: A
NS3 Protease: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NS2B cofactor

NS3 Protease

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