SMTL ID : 5ywg.1

Crystal structure of Arabidopsis thaliana HPPD complexed with Mesotrione

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.226, H.308, E.394 Ligands: 92L.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.226, A:H.308, A:E.394 CO.3: 4 residues within 4Å: Chain B: H.226, H.308, E.394 Ligands: 92L.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.226, B:H.308, B:E.394, B:E.394

2 x 92L: 2-[(4-methylsulfonyl-2-nitro-phenyl)-oxidanyl-methylidene]cyclohexane-1,3-dione(Non-covalent)

92L.2: 17 residues within 4Å: Chain A: H.226, V.228, S.267, P.280, N.282, H.308, L.368, Q.379, F.381, F.392, E.394, F.419, G.420, K.421, N.423, F.424 Ligands: CO.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.280, A:F.381, A:K.421, A:F.424, A:F.424 92L.4: 16 residues within 4Å: Chain B: H.226, V.228, S.267, P.280, N.282, H.308, L.368, Q.379, F.381, F.392, E.394, F.419, G.420, N.423, F.424 Ligands: CO.3 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.280, B:F.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, H.Y. et al., Molecular insights into the mechanism of 4-hydroxyphenylpyruvate dioxygenase inhibition: enzyme kinetics, X-ray crystallography and computational simulations. FEBS J. (2019)

Release Date

2019-01-16

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4-hydroxyphenylpyruvate dioxygenase

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