SMTL ID : 5ywh.1

Crystal structure of Arabidopsis thaliana HPPD complexed with Y13508

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.226, H.308, E.394 Ligands: 92U.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.226, A:H.308, A:E.394 FE.3: 4 residues within 4Å: Chain B: H.226, H.308, E.394 Ligands: 92U.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.226, B:H.308, B:E.394

2 x 92U: [1,3-diethyl-2,2-bis(oxidanylidene)-2$l^{6},1,3-benzothiadiazol-5-yl]-(1-methyl-5-oxidanyl-pyrazol-4-yl)methanone(Non-covalent)

92U.2: 15 residues within 4Å: Chain A: H.226, V.269, P.280, H.308, M.335, L.368, F.381, F.392, E.394, F.419, G.420, K.421, N.423, F.424 Ligands: FE.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.368, A:F.381, A:F.381, A:F.392, A:F.419, A:N.423, A:F.424 Hydrogen bonds: A:S.267 92U.4: 15 residues within 4Å: Chain B: H.226, V.228, S.267, V.269, P.280, Q.293, H.308, Q.379, F.381, E.394, F.419, G.420, F.424, L.427 Ligands: FE.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.381, B:F.419, B:F.424, B:F.424, B:L.427 Hydrogen bonds: B:S.267, B:Q.379

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W.C. et al., Crystal structure of Arabidopsis thaliana HPPD complexed with Y13508. To be published

Release Date

2019-01-16

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4-hydroxyphenylpyruvate dioxygenase

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