SMTL ID : 5ywk.1

Crystal structure of Arabidopsis thaliana HPPD complexed with Benquitrione-Methyl

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.226, H.308, E.394 Ligands: 92X.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.226, A:H.308, A:E.394, H2O.1 CO.3: 4 residues within 4Å: Chain B: H.226, H.308, E.394 Ligands: 92X.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.226, B:H.308, B:E.394, H2O.1

2 x 92X: 1,5-dimethyl-3-(2-methylphenyl)-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione(Non-covalent)

92X.2: 18 residues within 4Å: Chain A: H.226, V.228, S.267, P.280, N.282, H.308, M.335, L.368, Q.379, F.381, E.394, F.419, G.420, K.421, N.423, F.424, L.427 Ligands: CO.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.280, A:F.381, A:F.381, A:K.421, A:F.424 Hydrogen bonds: A:Q.379 92X.4: 16 residues within 4Å: Chain B: H.226, V.228, S.267, P.280, N.282, H.308, M.335, L.368, Q.379, F.381, E.394, F.419, G.420, N.423, F.424 Ligands: CO.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:P.280, B:F.381, B:F.381, B:F.381, B:F.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qu, R.Y. et al., Structure-Guided Discovery of Silicon-Containing Subnanomolar Inhibitor of Hydroxyphenylpyruvate Dioxygenase as a Potential Herbicide. J.Agric.Food Chem. (2021)

Release Date

2019-01-16

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4-hydroxyphenylpyruvate dioxygenase

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