- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x OXM: OXAMIC ACID(Non-covalent)
OXM.3: 9 residues within 4Å:- Chain A: V.68, S.92, A.93, G.94, Y.116, R.250, H.311, F.314
- Ligands: NAI.2
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:A.93, A:G.94, A:Y.116, A:Y.116, A:R.250, A:R.250, A:H.311
- Salt bridges: A:R.250
OXM.7: 10 residues within 4Å:- Chain B: F.67, V.68, S.92, A.93, G.94, Y.116, R.250, H.311, F.314
- Ligands: NAI.6
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:A.93, B:G.94, B:Y.116, B:R.250, B:R.250, B:H.311
- Salt bridges: B:R.250
OXM.9: 9 residues within 4Å:- Chain C: V.68, S.92, A.93, G.94, Y.116, R.250, H.311, F.314
- Ligands: NAI.8
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:A.93, C:G.94, C:Y.116, C:Y.116, C:R.250, C:R.250, C:H.311
- Salt bridges: C:R.250
OXM.13: 10 residues within 4Å:- Chain D: F.67, V.68, S.92, A.93, G.94, Y.116, R.250, H.311, F.314
- Ligands: NAI.12
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:A.93, D:G.94, D:Y.116, D:R.250, D:R.250, D:H.311
- Salt bridges: D:R.250
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.4: 4 residues within 4Å:- Chain A: N.96, H.97, V.98, D.99
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.97
- Water bridges: A:S.73, A:L.100
PGE.10: 4 residues within 4Å:- Chain C: N.96, H.97, V.98, D.99
1 PLIP interactions:1 interactions with chain C- Water bridges: C:L.100
PGE.14: 4 residues within 4Å:- Chain D: S.73, N.96, V.98, D.99
3 PLIP interactions:3 interactions with chain D- Water bridges: D:S.73, D:H.97, D:D.99
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furukawa, N. et al., Structural Basis of Sequential Allosteric Transitions in Tetrameric d-Lactate Dehydrogenases from Three Gram-Negative Bacteria. Biochemistry (2018)
- Release Date
- 2018-09-19
- Peptides
- D-lactate dehydrogenase (Fermentative): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x OXM: OXAMIC ACID(Non-covalent)
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furukawa, N. et al., Structural Basis of Sequential Allosteric Transitions in Tetrameric d-Lactate Dehydrogenases from Three Gram-Negative Bacteria. Biochemistry (2018)
- Release Date
- 2018-09-19
- Peptides
- D-lactate dehydrogenase (Fermentative): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D