SMTL ID : 6abj.1

The apo-structure of D-lactate dehydrogenase from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-tetramer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: F.67, V.68, A.93, G.94, Y.116, H.311, F.314 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.67, A:V.68, A:F.314 Hydrogen bonds: A:A.93, A:G.94 Salt bridges: A:H.311 ACT.2: 6 residues within 4Å: Chain B: V.68, S.92, A.93, G.94, Y.116, H.311 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.68 Hydrogen bonds: B:A.93, B:G.94, B:Y.116, B:Y.116 Salt bridges: B:H.311 ACT.3: 7 residues within 4Å: Chain C: F.67, V.68, A.93, G.94, Y.116, H.311, F.314 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:F.67, C:V.68, C:F.314 Hydrogen bonds: C:A.93, C:G.94, C:Y.116 Salt bridges: C:H.311 ACT.4: 6 residues within 4Å: Chain D: V.68, S.92, A.93, G.94, Y.116, H.311 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:V.68 Hydrogen bonds: D:A.93, D:G.94, D:Y.116 Salt bridges: D:H.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furukawa, N. et al., Structural Basis of Sequential Allosteric Transitions in Tetrameric d-Lactate Dehydrogenases from Three Gram-Negative Bacteria. Biochemistry (2018)

Release Date

2018-09-19

Peptides

D-lactate dehydrogenase (Fermentative): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

D-lactate dehydrogenase (Fermentative)

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