SMTL ID : 5z2e.1

Dipicolinate bound Dihydrodipicolinate reductase from Paenisporosarcina sp. TG-14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x PDC: PYRIDINE-2,6-DICARBOXYLIC ACID(Non-covalent)

PDC.1: 7 residues within 4Å: Chain A: H.155, H.156, K.159, S.164, G.165, T.166, A.215 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.215 Hydrogen bonds: A:K.159, A:G.165, A:T.166, A:T.166 Water bridges: A:H.156, A:T.166 Salt bridges: A:H.155, A:H.156, A:K.159, A:K.159 pi-Cation interactions: A:H.155 PDC.2: 7 residues within 4Å: Chain B: H.155, H.156, K.159, S.164, G.165, T.166, A.215 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.215 Hydrogen bonds: B:K.159, B:G.165, B:T.166, B:T.166 Water bridges: B:H.156, B:T.166 Salt bridges: B:H.155, B:H.156, B:K.159, B:K.159 pi-Cation interactions: B:H.155 PDC.3: 7 residues within 4Å: Chain C: H.155, H.156, K.159, S.164, G.165, T.166, A.215 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:A.215 Hydrogen bonds: C:K.159, C:G.165, C:T.166, C:T.166, C:T.166 Water bridges: C:H.156 Salt bridges: C:H.155, C:H.156, C:K.159, C:K.159 pi-Cation interactions: C:H.155 PDC.4: 7 residues within 4Å: Chain D: H.155, H.156, K.159, S.164, G.165, T.166, A.215 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:A.215 Hydrogen bonds: D:K.159, D:G.165, D:T.166, D:T.166, D:T.166 Water bridges: D:H.156 Salt bridges: D:H.155, D:H.156, D:K.159, D:K.159 pi-Cation interactions: D:H.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, C.W. et al., Crystal structure of dihydrodipicolinate reductase (PaDHDPR) from Paenisporosarcina sp. TG-14: structural basis for NADPH preference as a cofactor. Sci Rep (2018)

Release Date

2018-06-27

Peptides

Dihydrodipicolinate reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Dihydrodipicolinate reductase

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