SMTL ID : 5za1.1 (1 other biounit)

Ligand complex of RORgt LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x 9A0: 2-[4-({[4-(ethylsulfonyl)phenyl]acetyl}amino)phenyl]-2-methyl-N-phenylpropanamide(Non-covalent)

9A0.1: 20 residues within 4Å: Chain A: C.25, Q.26, L.27, L.32, C.60, H.63, L.64, M.98, V.101, L.102, R.104, M.105, R.107, A.108, F.117, F.118, F.128, I.140, H.219 Ligands: EDO.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.27, A:L.64, A:V.101, A:L.102, A:R.104, A:A.108, A:F.128, A:F.128, A:I.140 Hydrogen bonds: A:F.117 Water bridges: A:E.119 pi-Stacking: A:F.118, A:H.219

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: M.105, V.116, I.140, S.144 Ligands: 9A0.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.144, A:S.144 EDO.3: 4 residues within 4Å: Chain A: E.44, G.47, Y.48, K.51 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.44 EDO.4: 2 residues within 4Å: Chain A: R.199, S.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.199, A:S.201 EDO.5: 8 residues within 4Å: Chain A: C.106, R.107, L.147, S.148, L.150, H.151, F.152 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.147, A:F.152 Water bridges: A:H.151 EDO.6: 8 residues within 4Å: Chain A: L.29, L.33, R.36, C.106, R.107, Y.109, S.148 Ligands: EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.36, A:S.148 Water bridges: A:R.36, A:R.107

1 x DMF: DIMETHYLFORMAMIDE(Non-covalent)

DMF.7: 2 residues within 4Å: Chain A: E.126, R.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sasaki, Y. et al., Discovery of a potent orally bioavailable retinoic acid receptor-related orphan receptor-gamma-t (ROR gamma t) inhibitor, S18-000003. Bioorg. Med. Chem. Lett. (2018)

Release Date

2018-10-31

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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