SMTL ID : 5za1.2 (1 other biounit)

Ligand complex of RORgt LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x 9A0: 2-[4-({[4-(ethylsulfonyl)phenyl]acetyl}amino)phenyl]-2-methyl-N-phenylpropanamide(Non-covalent)

9A0.1: 20 residues within 4Å: Chain A: C.25, Q.26, L.27, L.32, C.60, H.63, L.64, V.101, L.102, R.104, M.105, R.107, A.108, F.117, F.118, F.128, I.140, H.219 Ligands: EDO.3, EDO.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.26, A:L.27, A:L.64, A:V.101, A:L.102, A:R.104, A:A.108, A:F.128, A:F.128, A:I.140 Hydrogen bonds: A:F.117 pi-Stacking: A:F.118, A:H.219

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: A.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.130 Water bridges: A:M.53 EDO.3: 5 residues within 4Å: Chain A: M.105, V.116, I.140, S.144 Ligands: 9A0.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.144, A:S.144 EDO.4: 6 residues within 4Å: Chain A: C.106, R.107, L.147, S.148, H.151, F.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.106, A:H.151, A:F.152 EDO.5: 5 residues within 4Å: Chain A: H.63, E.66, F.118, E.119 Ligands: 9A0.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.63, A:E.119 Water bridges: A:Q.26

1 x DMF: DIMETHYLFORMAMIDE(Non-covalent)

DMF.6: 6 residues within 4Å: Chain A: A.95, E.99, R.213, C.216, S.217, V.220 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sasaki, Y. et al., Discovery of a potent orally bioavailable retinoic acid receptor-related orphan receptor-gamma-t (ROR gamma t) inhibitor, S18-000003. Bioorg. Med. Chem. Lett. (2018)

Release Date

2018-10-31

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nuclear receptor ROR-gamma

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