SMTL ID : 5ze6.2 (1 other biounit)

CRYSTAL STRUCTURE OF OCTAPRENYL PYROPHOSPHATE SYNTHASE FROM ESCHERICHIA COLI WITH BPH-981

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x HJX: 2-hydroxy-6-(tetradecyloxy)benzoic acid(Non-covalent)

HJX.1: 15 residues within 4Å: Chain A: H.77, T.80, L.81, D.84, R.93, D.113, Y.116, V.139, I.142, E.146, K.235 Chain B: D.113, Y.116, T.117 Ligands: MG.3 14 PLIP interactions: 10 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:T.80, A:L.81, A:D.113, A:Y.116, A:Y.116, A:V.139, A:E.146, B:D.113, B:Y.116, B:Y.116, B:T.117 Hydrogen bonds: A:R.93, A:R.93 Salt bridges: A:K.235

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.84, D.88, E.146 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.84, A:D.88, A:D.88, H2O.1, H2O.1 MG.3: 4 residues within 4Å: Chain A: D.84, D.88, S.90 Ligands: HJX.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.84, A:D.88, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malwal, S.R. et al., Discovery of Lipophilic Bisphosphonates That Target Bacterial Cell Wall and Quinone Biosynthesis. J.Med.Chem. (2019)

Release Date

2019-02-27

Peptides

Octaprenyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Octaprenyl diphosphate synthase

Related Entries With Identical Sequence